Stem-loop vvi-MIR403e

Accession

MI0007968

Description

Vitis vinifera vvi-MIR403e precursor miRNA

Literature search

3 open access papers mention vvi-MIR403e
(6 sentences)

Sequence

1469488 reads, 7497.0 reads per million, 226 experiments

gcacaucucaAGUUUGUGCGUGAAUCAAACCccaucguagccguccauaucuucguguacuaaucacggggcgauucgacgccgUUAGAUUCACGCACAAACUCGcgaucugucc
(((.(((.(.((((((((((((((((.(((..(.(((.((.(((((.......((((.......))))))))).))))).)..))).)))))))))))))))).).))).)))..

Structure

--   c   u a                A   Cc a   u  c     auaucuu    ua 
  gca auc c AGUUUGUGCGUGAAUC AAC  c ucg ag cgucc       cgug  c
  ||| ||| | |||||||||||||||| |||  | ||| || |||||       ||||  u
  ugu uag G UCAAACACGCACUUAG UUg  g agc uu gcggg       gcac  a
cc   c   c C                A   cc c   -  a     -------    ua 

Annotation confidence High

Genome context

gb|CP126652.1|: 1750364-1750478 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR403e

Mature vvi-miR403e-5p

• Accession: MIMAT0055891
• Description: Vitis vinifera vvi-miR403e-5p mature miRNA
• Sequence: 11 - AGUUUGUGCGUGAAUCAAACC - 31
• Evidence: experimental ; unknown

Mature vvi-miR403e-3p

• Accession: MIMAT0006573
• Description: Vitis vinifera vvi-miR403e-3p mature miRNA
• Sequence: 85 - UUAGAUUCACGCACAAACUCG - 105
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558