Stem-loop vvi-MIR535a

Accession

MI0006580

Description

Vitis vinifera vvi-MIR535a precursor miRNA

Literature search

4 open access papers mention vvi-MIR535a
(15 sentences)

Sequence

2583865 reads, 3625.0 reads per million, 223 experiments

uguaauugcuUGACAACGAGAGAGAGCACGCuagucagcauucaugcgaggaacaugacuguguacaggcGUGCUCUCUCUCGCUGUCAUAcaaucuucuc
....((((..(((((.((((((((((((((((.((..(((.(((((.......))))).)))..)).)))))))))))))))).)))))..))))......

Structure

--ugua    cu     A                a  ca   u     cg 
      auug  UGACA CGAGAGAGAGCACGCu gu  gca ucaug  a
      ||||  ||||| |||||||||||||||| ||  ||| |||||  g
      uaac  ACUGU GCUCUCUCUCGUGcgg ca  ugu aguac  g
cucuuc    AU     C                a  ug   c     aa 

Annotation confidence High

Genome context

gb|CP126654.1|: 20617261-20617361 [-]

Mature vvi-miR535a-5p

• Accession: MIMAT0005735
• Description: Vitis vinifera vvi-miR535a-5p mature miRNA
• Sequence: 11 - UGACAACGAGAGAGAGCACGC - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR535a-3p

• Accession: MIMAT0055863
• Description: Vitis vinifera vvi-miR535a-3p mature miRNA
• Sequence: 71 - GUGCUCUCUCUCGCUGUCAUA - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558