Stem-loop vvi-MIR394c

Accession

MI0007953

Description

Vitis vinifera vvi-MIR394c precursor miRNA

Literature search

3 open access papers mention vvi-MIR394c
(5 sentences)

Sequence

520481 reads, 2758.0 reads per million, 214 experiments

cagagccauuUUGGCAUUCUGUCCACCUCCAUauauaccaauucuucugaauuggcgcccacaagcguuuggaggcggcCAGGAUGCCAAAUUGGCUCUGua
((((((((.((((((((((((.((.((((((......(((((((....)))))))(((......)))..)))))).)).)))))))))))).))))))))..

Structure

--        u            U  A      --------Uauaua       u 
  cagagcca uUUGGCAUUCUG CC CCUCCA              ccaauuc u
  |||||||| |||||||||||| || ||||||              |||||||  
  GUCUCGGU AAACCGUAGGAC gg ggaggu              gguuaag c
au        U            c  c      uugcgaacacccgc       u 

Annotation confidence Low

Genome context

gb|CP126665.1|: 3566220-3566321 [-]

Mature vvi-miR394c-5p

• Accession: MIMAT0006558
• Description: Vitis vinifera vvi-miR394c-5p mature miRNA
• Sequence: 11 - UUGGCAUUCUGUCCACCUCCAU - 32
• Evidence: experimental ; Illumina [2]

Mature vvi-miR394c-3p

• Accession: MIMAT0055878
• Description: Vitis vinifera vvi-miR394c-3p mature miRNA
• Sequence: 80 - CAGGAUGCCAAAUUGGCUCUG - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558