Stem-loop vvi-MIR169a

Accession

MI0006521

Description

Vitis vinifera vvi-MIR169a precursor miRNA

Literature search

10 open access papers mention vvi-MIR169a
(24 sentences)

Sequence

133546 reads, 653.0 reads per million, 165 experiments

gagaguggaaugCAGCCAAGGAUGACUUGCCGGaauuuauauauagugagaagagaagaggcuauaugcuuucacauauauagugaacccuGGCAAGUUGUCCUUGGCUACAuuugauucucuu
((((((.(((((.((((((((((((((((((((..(((((((((((((((.........(((.....)))))))).))))).)))))..)))))))))))))))))))).))))).))))))..

Structure

--      g     C                    aa     -     -     aagagaaga   u 
  gagagu gaaug AGCCAAGGAUGACUUGCCGG  uuuau auaua gugag         ggc a
  |||||| ||||| ||||||||||||||||||||  ||||| ||||| |||||         ||| u
  cucuua uuuAC UCGGUUCCUGUUGAACGGuc  aagug uauau cacuu         ucg a
uu      g     A                    cc     a     a     ---------   u 

Annotation confidence High

Genome context

gb|CP126658.1|: 16364117-16364240 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from vvi-MIR169a

Mature vvi-miR169a-5p

• Accession: MIMAT0005676
• Description: Vitis vinifera vvi-miR169a-5p mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGG - 33
• Evidence: experimental ; Array [2]

Mature vvi-miR169a-3p

• Accession: MIMAT0055806
• Description: Vitis vinifera vvi-miR169a-3p mature miRNA
• Sequence: 92 - GGCAAGUUGUCCUUGGCUACA - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558