Stem-loop vvi-MIR169m

Accession

MI0006530

Description

Vitis vinifera vvi-MIR169m precursor miRNA

Literature search

8 open access papers mention vvi-MIR169m
(16 sentences)

Sequence

1974 reads, 135 reads per million, 2 experiments

agaguggaaguGAGCCAAGGAUGACUUGCCGGcagcugcagcaaggcauuaagguuuaacuggccauaacuggcaagcauccgaggcucuguuucacccucu
((.((((((..(((((..(((((.((((((((......(((..((((......))))..))).......)))))))))))))..)))))..)))))).))..

Structure

--  a      gu     AA     A        -cagcug   ca    au 
  ag guggaa  GAGCC  GGAUG CUUGCCGG       cag  aggc  u
  || ||||||  |||||  ||||| ||||||||       |||  ||||   
  uc cacuuu  cucgg  ccuac gaacgguc       guc  uuug  a
uc  c      gu     ag     -        aauaccg   aa    ga 

Annotation confidence Not enough data

Genome context

chr11: 16361236-16361337 [+]

Mature vvi-miR169m

• Accession: MIMAT0005685
• Description: Vitis vinifera vvi-miR169m mature miRNA
• Sequence: 12 - GAGCCAAGGAUGACUUGCCGG - 32
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558