Stem-loop vvi-MIR169f

Accession

MI0006526

Description

Vitis vinifera vvi-MIR169f precursor miRNA

Literature search

8 open access papers mention vvi-MIR169f
(19 sentences)

Sequence

137030 reads, 704.0 reads per million, 163 experiments

gauauuauggugCAGCCAAGGAUGACUUGCCGAaaauaauuugcucgaucguuaaugugcuucuccaguuucuauugcaauuuaugcauagggcaauauauauauccuuuauagcuuguuaauucagauauugacugaggaaucaauaaugGGCAAGUUGUGUUUGGCUACAuguuuaucucau
((((.....(((.(((((((.((((((((((.........((.((((...((((((((.((..........((((.(((.....)))))))(((((..((((.......))))..))))).....)))))))))))))).)).........)))))))))).))))))).)))...))))....

Structure

----    uuaug   C       G          GAaaauaau  g    auc        g  ucuccaguuucuauugcaauuuaugcauag     ua    ua 
    gaua     gug AGCCAAG AUGACUUGCC         uu cucg   guuaaugu cu                              ggcaa  uaua  u
    ||||     ||| ||||||| ||||||||||         || ||||   |||||||| ||                              |||||  ||||  c
    cuau     uAC UCGGUUU UGUUGAACGG         aa gagu   caguuaua ga                              uuguu  auau  c
uacu    --uug   A       G          guaauaacu  g    ---        -  -------------------------cuuaa     cg    uu 

Annotation confidence High

Genome context

gb|CP126648.1|: 12708771-12708954 [+]

Mature vvi-miR169f-5p

• Accession: MIMAT0005681
• Description: Vitis vinifera vvi-miR169f-5p mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGA - 33
• Evidence: experimental ; Array [2]

Mature vvi-miR169f-3p

• Accession: MIMAT0055810
• Description: Vitis vinifera vvi-miR169f-3p mature miRNA
• Sequence: 152 - GGCAAGUUGUGUUUGGCUACA - 172
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558