miRBase entry: vvi-MIR156g

Stem-loop vvi-MIR156g


Accession
MI0006491
Description
Vitis vinifera vvi-MIR156g precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
11 open access papers mention vvi-MIR156g
(93 sentences)

Sequence

6845918 reads, 459070 reads per million, 2 experiments
ggugauguugUUGACAGAAGAUAGAGAGCACagaugaugaugugcauggaguuugcaucucacuccuuugugcucucuagacuucugucaucaccucagcccc
(((((......(((((((((.(((((((((((((.(((((.(((((.......))))).))).)).)))))))))))))..))))))))))))))........

Structure
--------     uguugU         -A             u  -   u     ug 
        gguga      UGACAGAAG  UAGAGAGCACaga ga uga gugca  g
        |||||      |||||||||  ||||||||||||| || ||| |||||  a
        ccacu      acugucuuc  aucucucguguuu cu acu uacgu  g
ccccgacu     ------         ag             c  c   c     uu 


Annotation confidence Not enough data
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Genome context
chr17: 3046324-3046426 [-]

Database links

Mature vvi-miR156g

Accession MIMAT0005646
Description Vitis vinifera vvi-miR156g mature miRNA
Sequence 11 - UUGACAGAAGAUAGAGAGCAC - 31
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558