Stem-loop vvi-MIR156g

Accession

MI0006491

Description

Vitis vinifera vvi-MIR156g precursor miRNA

Literature search

11 open access papers mention vvi-MIR156g
(93 sentences)

Sequence

6845918 reads, 459069 reads per million, 2 experiments

ggugauguugUUGACAGAAGAUAGAGAGCACagaugaugaugugcauggaguuugcaucucacuccuuugugcucucuagacuucugucaucaccucagcccc
(((((......(((((((((.(((((((((((((.(((((.(((((.......))))).))).)).)))))))))))))..))))))))))))))........

Structure

--------     uguugU         -A             u  -   u     ug 
        gguga      UGACAGAAG  UAGAGAGCACaga ga uga gugca  g
        |||||      |||||||||  ||||||||||||| || ||| |||||  a
        ccacu      acugucuuc  aucucucguguuu cu acu uacgu  g
ccccgacu     ------         ag             c  c   c     uu 

Annotation confidence Low

Genome context

chr17: 3046324-3046426 [-]

Mature vvi-miR156g

• Accession: MIMAT0005646
• Description: Vitis vinifera vvi-miR156g mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCAC - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558