Stem-loop vvi-MIR159b

Accession

MI0006494

Description

Vitis vinifera vvi-MIR159b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

4 open access papers mention vvi-MIR159b
(8 sentences)

Sequence

gggcuugugggagcuucuuuacacuccagaacugaaaggagauacuacugcugguucaugaaaaccuauggcugcauucucuauacugaaauuuuguauacaaacuauggguuugcaugaacuuggagaaguguuugcuuuuaucuuuucuggcCUUGGAGUGAAGGGAGCUCUCauaaccgauc
.((.((((((((((((((((.((((((((..(.(((((((((((((.((.(.((((((((.((((((((((.((.......(((((.........)))))))..)))))))))).)))))))).).)).))))))........))))))).)..).)))))))))))))))))))))))))....

Structure

---g  c                a       - aa u       --------      a  g u        a          -c  cauucuc     uga 
    gg uugugggagcuucuuu cacucca g  c gaaagga        gauacu cu c gguucaug aaaccuaugg  ug       uauac   a
    || |||||||||||||||| ||||||| |  | |||||||        |||||| || | |||||||| ||||||||||  ||       |||||   a
    cc aauaCUCUCGAGGGAA GUGAGGU C  g cuuuucu        uuguga ga g ucaaguac uuuggguauc  ac       auaug   u
cuag  -                -       U cg u       auuuucgu      a  g u        g          aa  -------     uuu 

Annotation confidence Not enough data

Genome context

chr15: 18471875-18472059 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR159b

Mature vvi-miR159b

• Accession: MIMAT0005649
• Description: Vitis vinifera vvi-miR159b mature miRNA
• Sequence: 155 - CUUGGAGUGAAGGGAGCUCUC - 175
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558