Stem-loop vvi-MIR160b

Accession

MI0006497

Description

Vitis vinifera vvi-MIR160b precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

4 open access papers mention vvi-MIR160b
(11 sentences)

Sequence

30 reads, 2 reads per million, 2 experiments

aauauuguucUGCCUGGCUCCCUGAAUGCCAUCuaagaagcuuguuaaagaguguugacaaccuuccuauuuggcaugaggggagucaagcaggcgaaacacuu
....((((.((((.(((((((((..((((((..((.((((.(((((((......))))))).)))).))..))))))..))))))))).)))))))).......

Structure

---aaua    u    C         GA      UC  a    c       ag 
       uugu cUGC UGGCUCCCU  AUGCCA  ua gaag uuguuaa  a
       |||| |||| |||||||||  ||||||  || |||| |||||||   
       agcg gacg acugagggg  uacggu  au cuuc aacaguu  g
uucacaa    -    a         ag      uu  c    c       gu 

Annotation confidence Not enough data

Genome context

chr10: 1222379-1222482 [+]

Mature vvi-miR160b

• Accession: MIMAT0005652
• Description: Vitis vinifera vvi-miR160b mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGAAUGCCAUC - 33
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558