Stem-loop vvi-MIR164c

Accession

MI0006505

Description

Vitis vinifera vvi-MIR164c precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

5 open access papers mention vvi-MIR164c
(15 sentences)

Sequence

101202 reads, 6785 reads per million, 2 experiments

uugagcaagaUGGAGAAGCAGGGCACGUGCAuuacuagcucaugcaccacaaaccaauaaucuuuugcucgaguuagacucuugcuugcugcuuuga
...((((((..((((.(((.(((((.((((((.........))))))..................)))))..)))...))))..)))))).......

Structure

----uug      aU    --A   -A     -----------------C      uac 
       agcaag  GGAG   AGC  GGGCA                  GUGCAu   u
       ||||||  ||||   |||  |||||                  ||||||   a
       ucguuc  ucuc   uug  cucgu                  cacgua   g
aguuucg      gu    aga   ag     uuucuaauaaccaaacac      cuc 

Annotation confidence Not enough data

Genome context

chr8: 10080460-10080556 [+]

Mature vvi-miR164c

• Accession: MIMAT0005660
• Description: Vitis vinifera vvi-miR164c mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558