Stem-loop vvi-MIR166d

Accession

MI0006510

Description

Vitis vinifera vvi-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

8 open access papers mention vvi-MIR166d
(15 sentences)

Sequence

2197305 reads, 147335 reads per million, 2 experiments

cugcuuugaggggauuguugucuggcucgaggccaccaaccaucuuugauugauucaaauacuuugaucagcuucaacccaucuucuccuucaauucaauuccacccucugauuauguguuagugcccUCGGACCAGGCUUCAUUCCCCucaaucacugc
.....(((((((((.((..((((((.((((((.(((.((((((.(((((.....)))))......((((((.....................................))))))))).))).))).)))))).))))))..)).))))))))).......

Structure

--cugcu         u  uu      c      c   c   -   cuuugauugauucaaauacuuu      cuucaacccaucuucuc 
       uugagggga ug  gucugg ucgagg cac aac cau                      gaucag                 c
       ||||||||| ||  |||||| |||||| ||| ||| |||                      ||||||                 u
       aacuCCCCU AC  CGGACC GGCUcc gug uug gua                      uuaguc                 u
cgucacu         U  UU      A      c   a   u   ----------------------      ucccaccuuaacuuaac 

Annotation confidence High

Genome context

chr16: 21405216-21405375 [-]

Mature vvi-miR166d

• Accession: MIMAT0005665
• Description: Vitis vinifera vvi-miR166d mature miRNA
• Sequence: 129 - UCGGACCAGGCUUCAUUCCCC - 149
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558