Stem-loop vvi-MIR167c

Accession

MI0006517

Description

Vitis vinifera vvi-MIR167c precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

7 open access papers mention vvi-MIR167c
(12 sentences)

Sequence

972134 reads, 65185 reads per million, 2 experiments

caguagcaguUGAAGCUGCCAGCAUGAUCUCaacuucccuauacaagucaaggaaagaucagaucaugugguagccucaccuguugauggg
((.((((((.(((.(((((((.((((((((...(((.(((..........))).)))...))))))))))))))).))).)))))).))..

Structure

--  g      u   A       G        Caa   c   auac 
  ca uagcag UGA GCUGCCA CAUGAUCU   cuu ccu    a
  || |||||| ||| ||||||| ||||||||   ||| |||     
  gu guuguc acu cgauggu guacuaga   gaa gga    a
gg  a      c   c       -        cua   a   acug 

Annotation confidence Not enough data

Genome context

NW_003724203.1: 260014-260104 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR167c

Mature vvi-miR167c

• Accession: MIMAT0005672
• Description: Vitis vinifera vvi-miR167c mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUC - 31
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558