Stem-loop vvi-MIR169f

Accession

MI0006526

Description

Vitis vinifera vvi-MIR169f precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169f
(19 sentences)

Sequence

3646 reads, 245 reads per million, 2 experiments

gauauuauggugCAGCCAAGGAUGACUUGCCGAaaauaauuugcucgaucguuaaugugcuucuccaguuucuauugcaauuuaugcauagggcaauauauauauccuuuauagcuuguuaauucagauauugacugaggaaucaauaaugggcaaguuguguuuggcuacauguuuaucucau
((((.....(((.(((((((.((((((((((.........((.((((...((((((((.((..........((((.(((.....)))))))(((((..((((.......))))..))))).....)))))))))))))).)).........)))))))))).))))))).)))...))))....

Structure

----    uuaug   C       G          GAaaauaau  g    auc        g  ucuccaguuucuauugcaauuuaugcauag     ua    ua 
    gaua     gug AGCCAAG AUGACUUGCC         uu cucg   guuaaugu cu                              ggcaa  uaua  u
    ||||     ||| ||||||| ||||||||||         || ||||   |||||||| ||                              |||||  ||||  c
    cuau     uac ucgguuu uguugaacgg         aa gagu   caguuaua ga                              uuguu  auau  c
uacu    --uug   a       g          guaauaacu  g    ---        -  -------------------------cuuaa     cg    uu 

Annotation confidence Not enough data

Genome context

chr1: 12404208-12404391 [+]

Mature vvi-miR169f

• Accession: MIMAT0005681
• Description: Vitis vinifera vvi-miR169f mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGA - 33
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558