Stem-loop vvi-MIR169k

Accession

MI0006529

Description

Vitis vinifera vvi-MIR169k precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169k
(15 sentences)

Sequence

3724 reads, 251 reads per million, 2 experiments

gagaguggagugCAGCCAAGGAUGACUUGCCGGaauucacauauagaguggaaugaggcaagaggccggccucuucccauggugucccuggcagguuguccuuggcuaccuuucguucucuu
((((((((((.(.((((((((((((((((((((....(((.(((...(.((((.(((((.........))))))))))))))))...)))))))))))))))))))).).))))))))))..

Structure

--          u C                    aauu   a   aga u    u     aag 
  gagaguggag g AGCCAAGGAUGACUUGCCGG    cac uau   g ggaa gaggc   a
  |||||||||| | ||||||||||||||||||||    ||| |||   | |||| |||||   g
  cucuugcuuu c ucgguuccuguuggacgguc    gug gua   c ccuu cuccg   g
uu          c a                    -ccu   -   --- -    -     gcc 

Annotation confidence Not enough data

Genome context

chr11: 16108539-16108660 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from vvi-MIR169k

Mature vvi-miR169k

• Accession: MIMAT0005684
• Description: Vitis vinifera vvi-miR169k mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGG - 33
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558