Stem-loop vvi-MIR169s

Accession

MI0006533

Description

Vitis vinifera vvi-MIR169s precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169s
(15 sentences)

Sequence

3689 reads, 248 reads per million, 2 experiments

gaaaguggauugCAGCCAAGGAUGACUUGCCGGcacuuggcauuaggcaccaucgaucaucuucccggcaaguuguuccuggcuacauucugcucucuu
((.((((((.((.(((((.((((((((((((((....(((.........)))............)))))))))))))).))))).)).)))))).))..

Structure

--  a      u  C     A              --------cacu   cau 
  ga agugga ug AGCCA GGAUGACUUGCCGG            ugg   u
  || |||||| || ||||| ||||||||||||||            |||   a
  cu ucgucu ac ucggu cuuguugaacggcc            acc   g
uu  c      u  a     c              cuucuacuagcu   acg 

Annotation confidence Not enough data

Genome context

chr11: 16439712-16439810 [+]

Mature vvi-miR169s

• Accession: MIMAT0005688
• Description: Vitis vinifera vvi-miR169s mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGG - 33
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558