Stem-loop vvi-MIR319b

Accession

MI0006548

Description

Vitis vinifera vvi-MIR319b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

7 open access papers mention vvi-MIR319b
(28 sentences)

Sequence

90 reads, 6 reads per million, 2 experiments

uguggaagaaggagcucucuuuaguccaguccgagacagcuucaaggcugauacguggcugcugacucguugcuucaagaacucaucacauaggccuggaaaagauggaugguuuuuugauccaacgaugcaggagcugcguucaguuauggcugucacgucUUGGACUGAAGGGAGCUCCCUuguauuccaca
(((((((...(((((((((((((((((((..((.(((((((....((((((.((((((((.(((..((((((..(((((((.(((((.(((....((.....)))))))))).)))))))..))))))..))).))))))))))))))..))))))).))..)))))))))))))))))))......)))))))

Structure

       ---gaa                   uc  a       ucaa      u        g   ac      cu       c     a   aggc  g 
uguggaa      ggagcucucuuuaguccag  cg gacagcu    ggcuga acguggcu cug  ucguug  ucaagaa ucauc cau    cu g
|||||||      |||||||||||||||||||  || |||||||    |||||| |||||||| |||  ||||||  ||||||| ||||| |||    || a
acaccuu      CCUCGAGGGAAGUCAGGUU  gc cugucgg    uugacu ugcgucga gac  agcaac  aguuuuu gguag gua    ga a
       auguUC                   cu  a       --ua      -        g   gu      cu       u     -   ----  a 

Annotation confidence Not enough data

Genome context

chr1: 4189562-4189755 [+]

Mature vvi-miR319b

• Accession: MIMAT0005703
• Description: Vitis vinifera vvi-miR319b mature miRNA
• Sequence: 163 - UUGGACUGAAGGGAGCUCCCU - 183
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558