Stem-loop vvi-MIR395a

Accession

MI0006556

Description

Vitis vinifera vvi-MIR395a precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention vvi-MIR395a
(30 sentences)

Sequence

7044 reads, 475 reads per million, 2 experiments

guccccuagaguucccuugaucacuucacuagggagcuucgcuaguuuuaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcugguaccga
....((..((((((((((((.(((((((.((((((((...............).))))))).))))))).))))))))))))..))......

Structure

--gucc  ua            u       c       - uucgcu 
      cc  gaguucccuuga cacuuca uagggag c      a
      ||  |||||||||||| ||||||| ||||||| |      g
      gg  CUCAAGGGGGUU GUGAAGU auccuuc g      u
agccau  uc            U       C       a uaauuu 

Annotation confidence Not enough data

Genome context

chr1: 6527928-6528019 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR395a

Mature vvi-miR395a

• Accession: MIMAT0005711
• Description: Vitis vinifera vvi-miR395a mature miRNA
• Sequence: 62 - CUGAAGUGUUUGGGGGAACUC - 82
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558