Stem-loop vvi-MIR395e

Accession

MI0006560

Description

Vitis vinifera vvi-MIR395e precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention vvi-MIR395e
(23 sentences)

Sequence

7106 reads, 479 reads per million, 2 experiments

cuccccuagaguucccuugaccacuucacuggggaccuucucuaauuauaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugccau
....((..((((((((((((.(((((((.((((((...((............)).)))))).))))))).))))))))))))..))......

Structure

--cucc  ua            c       c      ccu  ucuaa 
      cc  gaguucccuuga cacuuca ugggga   uc     u
      ||  |||||||||||| ||||||| ||||||   ||      
      gg  CUCAAGGGGGUU GUGAAGU auccuu   ag     u
uaccgu  uc            U       C      --c  uaaua 

Annotation confidence Not enough data

Genome context

chr1: 6505248-6505339 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from vvi-MIR395e

Mature vvi-miR395e

• Accession: MIMAT0005715
• Description: Vitis vinifera vvi-miR395e mature miRNA
• Sequence: 62 - CUGAAGUGUUUGGGGGAACUC - 82
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558