Stem-loop vvi-MIR396d

Accession

MI0006571

Description

Vitis vinifera vvi-MIR396d precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

5 open access papers mention vvi-MIR396d
(24 sentences)

Sequence

5169 reads, 345 reads per million, 2 experiments

cuuuguauucUUCCACAGCUUUCUUGAACUGcauuuuucagacuacugguguguuuuuguaugcacucaaagucauuguaacaguugcgguucaauaaagcugugggaagauaccaacag
....(((((.((((((((((((.((((((((((.....((((((...(((((((......)))))))...))))..)).......)))))))))).)))))))))))).)))))......

Structure

--cuuu     c            C          --uuuuu  --    acu       uu 
      guauu UUCCACAGCUUU UUGAACUGca       ca  gacu   ggugugu  u
      ||||| |||||||||||| ||||||||||       ||  ||||   |||||||   
      cauag agggugucgaaa aacuuggcgu       gu  cuga   ucacgua  u
gacaac     a            u          ugacaau  ua    aac       ug 

Annotation confidence Not enough data

Genome context

chr11: 5253110-5253229 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR396d

Mature vvi-miR396d

• Accession: MIMAT0005726
• Description: Vitis vinifera vvi-miR396d mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558