Stem-loop vvi-MIR399h

Accession

MI0006577

Description

Vitis vinifera vvi-MIR399h precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention vvi-MIR399h
(10 sentences)

Sequence

30 reads, 2 reads per million, 2 experiments

aggaauaacagugcaauccuccuuuggcagaaagaucaugcacaugcauacuucuguuuUGCCAAAGGAGAAUUGCCCUGccauucgcuc
..((((..(((.(((((.(((((((((((((((((..((((....))))...))).)))))))))))))).))))).)))..))))....

Structure

--ag    aa   u     c              -   -uc    a 
    gaau  cag gcaau cuccuuuggcagaa aga   augc c
    ||||  ||| ||||| |||||||||||||| |||   ||||  
    cuua  GUC CGUUA GAGGAAACCGUuuu ucu   uacg a
cucg    cc   C     A              g   uca    u 

Annotation confidence Not enough data

Genome context

chr10: 2983545-2983634 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from vvi-MIR399h

Mature vvi-miR399h

• Accession: MIMAT0005732
• Description: Vitis vinifera vvi-miR399h mature miRNA
• Sequence: 60 - UGCCAAAGGAGAAUUGCCCUG - 80
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558