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miRBase |
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Stem-loop sequence osa-MIR444d |
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Accession | MI0006976 (change log) | ||
Description | Oryza sativa miR444d stem-loop | ||
Gene family | MIPF0000402; MIR444 | ||
Literature search |
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23 open access papers mention osa-MIR444d | ||
Stem-loop |
aguuauu cau u c a a u g -- 5' gca gg ggca caagc ugaggca caacugcau acuugcaagaaag cacaa aaucauu ||| || |||| ||||| ||||||| ||||||||| ||||||||||||| ||||| |||||| a 3' cgu cc ccgu guucg acuccgu guugacgug ugaacguucuuuc guguu uuaguag --uaaac cuc u c a c u g ca |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
Morin et al identify by high throughput sequencing a product offset from miR444d.3 by 3 nts, named miR444b in [3]. |
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Database links |
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Mature sequence osa-miR444d.3 |
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Accession | MIMAT0005972 |
Sequence |
82 - uuguggcuuucuugcaaguug - 102 |
Deep sequencing | 68 reads, 2 experiments |
Evidence | experimental; MPSS [1], Northern [1], cloned [2], 454 [3] |
Database links |
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Mature sequence osa-miR444d.2 |
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Accession | MIMAT0005973 |
Sequence |
103 - ugcaguugcugccucaagcuu - 123 |
Deep sequencing | 1373 reads, 2 experiments |
Evidence | experimental; MPSS [1], Northern [1] |
Database links |
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Mature sequence osa-miR444d.1 |
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Accession | MIMAT0005974 |
Sequence |
108 - uugcugccucaagcuugcugc - 128 |
Deep sequencing | 706 reads, 2 experiments |
Evidence | experimental; MPSS [1], Northern [1] |
Database links |
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References |
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1 |
PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
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2 |
PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"
BMC Plant Biol. 8:25(2008).
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3 |
PMID:18323537
"Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
Genome Res. 18:571-584(2008).
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