Stem-loop sequence gga-mir-22

Accession

MI0006982 (change log)

Description

Gallus gallus miR-22 stem-loop

Gene family

MIPF0000053; mir-22

Literature search

12 open access papers mention gga-mir-22
(26 sentences)

Stem-loop

   gcucc       ccgg              -     a      u  -c  u 
5'      uggcugc    cagcaguucuucag uggca gcuuua gu  cu c
        |||||||    |||||||||||||| ||||| |||||| ||  || u
3'      accgaug    guugucaagaaguu accgu cgaaau cg  ga c
   cuugc       -uaa              g     -      -  au  u 

Deep sequencing

95290 reads, 940 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr19: 5380348-5380447 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR22
• RNAcentral:URS000075EF84_9031
• miRBase Tracker:MI0006982

Mature sequence gga-miR-22-5p

• Accession: MIMAT0007287
• Previous IDs: gga-miR-22*
• Sequence: 21 - aguucuucaguggcaagcuuua - 42
• Deep sequencing: 2105 reads, 5 experiments
• Evidence: experimental; cloned [1], Northern [3], Illumina [4]
• Database links:
  • RNAcentral:URS0000142DC3_9031
• Predicted targets:
  • TargetScanVert:gga-miR-22-5p
  • miRDB:gga-miR-22-5p

Mature sequence gga-miR-22-3p

• Accession: MIMAT0007288
• Previous IDs: gga-miR-22
• Sequence: 62 - aagcugccaguugaagaacugu - 83
• Deep sequencing: 93161 reads, 5 experiments
• Evidence: experimental; cloned [1-2], Northern [3], Illumina [4]
• Database links:
  • RNAcentral:URS0000096022_9031
• Predicted targets:
  • TargetScanVert:gga-miR-22-3p
  • miRDB:gga-miR-22-3p

References

1. PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. PMID:18511220 "Identification of novel chicken microRNAs and analysis of their genomic organization" Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH Gene. 418:34-40(2008).
4. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).