Stem-loop gga-mir-454

Accession

MI0006984

Description

Gallus gallus gga-mir-454 precursor miRNA mir-454

Gene
family

RF00746; mir-454

Literature search

13 open access papers mention gga-mir-454
(28 sentences)

Sequence

1385356 reads, 837.0 reads per million, 238 experiments

ccauuauccagcuuccuaaccuuaaggaugagACCCUAUCAAUAUUGCCUCUGCUUuugugcucaggguagUAGUGCAAUAUUGCUUAUAGGGUCUUuucuuuugaggguauucuucaugg
.......(((.........(((((((((.((((((((((((((((((((((((((((.(....)))))))).)).)))))))))...)))))))))).)).)))))))..........)))

Structure

ccauuau   -gcuuccuaa       -  u          ---         -  -       u u 
       cca          ccuuaag ga gagACCCUAU   CAAUAUUGC CU CUGCUUu g g
       |||          ||||||| || ||||||||||   ||||||||| || ||||||| |  
       ggu          ggaguuu cu UUCUGGGAUA   GUUAUAACG GA gauggga c c
-------   acuucuuaug       u  u          UUC         U  U       - u 

Annotation confidence High

Genome context

15: 421612-421732 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-454

Mature gga-miR-454-5p

• Accession: MIMAT0007291
• Description: Gallus gallus gga-miR-454-5p mature miRNA
• Sequence: 33 - ACCCUAUCAAUAUUGCCUCUGCUU - 56
• Evidence: experimental ; cloned [1]

Mature gga-miR-454-3p

• Accession: MIMAT0007292
• Description: Gallus gallus gga-miR-454-3p mature miRNA
• Sequence: 72 - UAGUGCAAUAUUGCUUAUAGGGUCUU - 97
• Evidence: experimental ; cloned [1-2], Illumina [3]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


3. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964