Stem-loop osa-MIR810b

Accession

MI0006986

Description

Oryza sativa osa-MIR810b precursor miRNA

Gene family

MIPF0000497; MIR810

Literature search

5 open access papers mention osa-MIR810b
(6 sentences)

Sequence

409 reads, 306 reads per million, 2 experiments

agcccaccacauguggcucgcaugcuuaaauaacuaacggcauaauuagaucacuugaugacgacguauaucgguguucgcuauauauacuaucuacugguaaguauaucuuuaauauacuuaccaguagauaguauauauagUGAACACCGAUAUGCGUCAUCaucAAGUGAUUUAAUUAUGCCGUUaguuaagcaugcgagccacauguggugagcuuacg
(((.((((((((((((((((((((((((....(((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((.....))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))).)))....

Structure

----   c                        aaua                             c                                               c 
    agc caccacauguggcucgcaugcuua    acuaacggcauaauuagaucacuugauga gacguauaucgguguucgcuauauauacuaucuacugguaaguauau u
    ||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| u
    ucg gugguguacaccgagcguacgaau    ugaUUGCCGUAUUAAUUUAGUGAAcuaCU CUGCGUAUAGCCACAAGUgauauauaugauagaugaccauucauaua u
gcau   a                        ----                             A                                               a 

Annotation confidence Not enough data

Genome context

Chr11: 959574-959796 [-]

Mature osa-miR810b.1

• Accession: MIMAT0005977
• Description: Oryza sativa osa-miR810b.1 mature miRNA
• Sequence: 144 - UGAACACCGAUAUGCGUCAUC - 164
• Evidence: experimental ; MPSS [1], Northern [1]

Mature osa-miR810b.2

• Accession: MIMAT0005978
• Description: Oryza sativa osa-miR810b.2 mature miRNA
• Sequence: 168 - AAGUGAUUUAAUUAUGCCGUU - 188
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956