Stem-loop osa-MIR1440a

Accession

MI0007028

Description

Oryza sativa osa-MIR1440a precursor miRNA

Gene family

MIPF0001531; MIR1440

Literature search

3 open access papers mention osa-MIR1440a
(3 sentences)

Sequence

73 reads, 33 reads per million, 2 experiments

aaaugccaaUGCUCAAAUACCACUCUCCUaaauuuccauucccaaauaccacccgggcccacaugucagccucauccagcacagggucccacaucacuuuuguuugaauggaaagugaggcugacaugugggcccggaugguauuugguaaugaaaauuugggagagugguauuugagcacuggcauuu
((((((((.((((((((((((((((((((((((((.((((.((((((((((.(((((((((((((((((((((((((((((.(((((........)))))))).....))))...)))))))))))))))))))))).)))))))))).)))).)))))))))))))))))))))))))).))))))))

Structure

        a                          c    c          c                      ---    -----   c     ccc 
aaaugcca UGCUCAAAUACCACUCUCCUaaauuu cauu ccaaauacca ccgggcccacaugucagccuca   ucca     gca agggu   a
|||||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||   ||||     ||| |||||    
uuuacggu acgaguuuauggugagaggguuuaaa guaa gguuuauggu ggcccggguguacagucggagu   aggu     ugu uuuca   c
        c                          a    u          a                      gaa    aaguu   -     cua 

Annotation confidence Not enough data

Genome context

Chr9: 5980506-5980694 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1440a

Mature osa-miR1440a

• Accession: MIMAT0005990
• Description: Oryza sativa osa-miR1440a mature miRNA
• Sequence: 10 - UGCUCAAAUACCACUCUCCU - 29
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25