miRBase entry: osa-MIR1442

Stem-loop osa-MIR1442


Accession
MI0007030
Description
Oryza sativa osa-MIR1442 precursor miRNA
Gene family
MIPF0000344; MIR818

Literature search
1 open access papers mention osa-MIR1442
(1 sentences)

Sequence

172 reads, 38 reads per million, 2 experiments
ucuauAUUCAUAGUACUAGAUGUGUcacauccaguacuagguugguguuuuaugggacgaagggaguagaucuuuugcuaaguggaggcuaaauucucaucaucagaggaguauacuacuccauccgucccauaauauaagggauaauggguggaugcgacacauccuaguaaaaugaaucugga
((((.((((((..(((((((((((((.((((((.(..........(((.((((((((((...(((((((.(((((((....((((((......))).)))...))))))).....)))))))...)))))))))).)))..........).)))))).))))))).))))))..)))))).))))

Structure
    u      AG      -       a      g acuagguugg   u          aag       ----a       cuaa   -   gc 
ucua AUUCAU  UACUAG AUGUGUc caucca u          ugu uuaugggacg   ggaguag     ucuuuug    gug gag  u
|||| ||||||  |||||| ||||||| |||||| |          ||| ||||||||||   |||||||     |||||||    ||| |||   
aggu uaagua  augauc uacacag guaggu g          aua aauacccugc   ccucauc     aggagac    uac cuu  a
    c      aa      c       c      g guaauaggga   u          cua       auaug       -uac   u   aa 


Annotation confidence Not enough data
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Genome context
Chr7: 27589072-27589256 [+]

Database links

Mature osa-miR1442

Accession MIMAT0005992
Description Oryza sativa osa-miR1442 mature miRNA
Sequence 6 - AUUCAUAGUACUAGAUGUGU - 25
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25