miRBase entry: osa-MIR1439

Stem-loop osa-MIR1439


Accession
MI0007031
Description
Oryza sativa osa-MIR1439 precursor miRNA
Gene family
MIPF0000344; MIR818

Literature search
4 open access papers mention osa-MIR1439
(8 sentences)

Sequence

47 reads, 16 reads per million, 2 experiments
uauuguuuuguuauaaauguaauacuaccuccgucccaaaauauagccauuuuuagcuaugaaucuagacauuguuuuuagcuaugaaucuagacauacaauguccaaauucauaacuaaaaaugcuuauaUUUUGGAACGGAGUGAGUAUUaaauuuguaguuuugugaua
..........((((((((.(((((((..((((((.(((((((((((.(((((((((.(((((((...((((((((.(((((........)))))...))))))))...))))))).))))))))).))))))))))).))))))..))))))).))))))))..........

Structure
uauuguuuug        g       ac      c           c         c       cua        --u     cua 
          uuauaaau uaauacu  cuccgu ccaaaauauag cauuuuuag uaugaau   gacauugu   uuuag   u
          |||||||| |||||||  |||||| ||||||||||| ||||||||| |||||||   ||||||||   |||||    
          gauguuua aUUAUGA  GAGGCA GGUUUUauauu guaaaaauc auacuua   cuguaaca   agauc   g
auaguguuuu        a       GU      A           c         a       aac        uac     uaa 


Annotation confidence Not enough data
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Genome context
Chr12: 10074109-10074280 [+]

Database links

Mature osa-miR1439

Accession MIMAT0005993
Description Oryza sativa osa-miR1439 mature miRNA
Sequence 132 - UUUUGGAACGGAGUGAGUAUU - 152
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25