Stem-loop sequence ptc-MIR1444b

Accession

MI0007038 (change log)

Description

Populus trichocarpa miR1444b stem-loop

Gene family

MIPF0000461; MIR1444

Literature search

3 open access papers mention ptc-MIR1444b
(118 sentences)

Stem-loop

   u     c      ua          a  u         gau 
5'  uuauc cucgaa  uugaucgaau ug augaaauau   g
    ||||| ||||||  |||||||||| || |||||||||   g
3'  aauag gagcuu  aacuggcuua ac uacuuugua   u
   a     u      gc          c  u         aau 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000346.2: 11417599-11417683 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR1444b

• ptc-MIR1444d: CM000346.2: 11417598-11417684 [-]
• ptc-MIR1444b: CM000346.2: 11417599-11417683 [+]

Database links

• miRBase Tracker:MI0007038

Mature sequence ptc-miR1444b

• Accession: MIMAT0006000
• Sequence: 56 - uucacauucggucaacguuc - 75
• Evidence: experimental; cloned [1]

References

1. PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).