Stem-loop sequence ptc-MIR1446a

Accession

MI0007042 (change log)

Description

Populus trichocarpa miR1446a stem-loop

Gene family

MIPF0000459; MIR1446

Literature search

3 open access papers mention ptc-MIR1446a
(6 sentences)

Stem-loop

        uuc          u   -             u ua    --      a 
5' ccaac   uucugaacuc cuc ccucaaccgcuac c  gagc  uuggca u
   |||||   |||||||||| ||| ||||||||||||| |  ||||  |||||| c
3' gguug   aagacuuggg gag ggaguuggcgaug g  uuug  agcugu c
        uac          -   u             u uc    uu      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000348.2: 11674408-11674512 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR1446a

• ptc-MIR477b: CM000348.2: 11674627-11674711 [-]
• ptc-MIR1446a: CM000348.2: 11674408-11674512 [-]
• ptc-MIR477a: CM000348.2: 11669997-11670081 [-]
• ptc-MIR1446b: CM000348.2: 11669781-11669883 [-]

Database links

• RNAcentral:URS000078C4EC_3694
• miRBase Tracker:MI0007042

Mature sequence ptc-miR1446a

• Accession: MIMAT0006004
• Sequence: 9 - uucugaacucucucccucaa - 28
• Evidence: experimental; cloned [1]

References

1. PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).