miRBase entry: gga-mir-216c

Stem-loop gga-mir-216c


Accession
MI0007066
Description
Gallus gallus gga-mir-216c precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

477 reads, 18 reads per million, 5 experiments
ugccagauuguagaAUCUCUACAGGUAAUUGUGAGAuugcuauaaagacaucacauuugccugcagagauuucccagucugugacu
...(((((((..((((((((.(((((((.(((((..((........))..))))).))))))).))))))))..))))))).....

Structure
--ugc       ua        A       U     GA  gcu 
     cagauug  gaAUCUCU CAGGUAA UGUGA  uu   a
     |||||||  |||||||| ||||||| |||||  ||    
     gucugac  uuuagaga guccguu acacu  ag   u
ucagu       cc        c       u     ac  aaa 


Annotation confidence Not enough data
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Genome context
chr3: 323485-323570 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from gga-mir-216c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-216c

Accession MIMAT0007339
Description Gallus gallus gga-miR-216c mature miRNA
Sequence 15 - AUCUCUACAGGUAAUUGUGAGA - 36
Evidence experimental
454 [1]

References

  1. PubMed ID: 18430245
    Deep sequencing of chicken microRNAs
    Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
    BMC Genomics (2008) 9:185