miRBase entry: ssc-mir-99b

Stem-loop ssc-mir-99b


Accession
MI0007077
Description
Sus scrofa ssc-mir-99b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
10 open access papers mention ssc-mir-99b
(15 sentences)

Sequence

1145 reads, 391 reads per million, 14 experiments
ggcaccCACCCGUAGAACCGACCUUGCGgggccuucgccgcacacaagcucgugucuguggguccguguc
(((((..(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))..)))))

Structure
     cC         AC   C    --C g   c 
ggcac  ACCCGUAGA  CGA CUUG   G ggc u
|||||  |||||||||  ||| ||||   | |||  
cugug  ugggugucu  gcu gaac   c ccg u
     cc         gu   c    aca g   c 


Annotation confidence Not enough data
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Genome context
chr6: 51858217-51858286 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-99b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-99b

Accession MIMAT0006018
Description Sus scrofa ssc-miR-99b mature miRNA
Sequence 7 - CACCCGUAGAACCGACCUUGCG - 28
Evidence experimental
Illumina [2-4]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168


  2. "Podolska A, Cirera S"
    (None) None:

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100