miRBase entry: csa-mir-92c

Stem-loop csa-mir-92c


Accession
MI0007191
Description
Ciona savignyi csa-mir-92c precursor miRNA
Gene family
MIPF0000509; mir-92

Literature search
1 open access papers mention csa-mir-92c
(5 sentences)

Sequence

guauauagcagucaggaacggccgagugugguguauuguacucguagaaauaacagUAUUGCACCUGUCCCGGCCGAUcuugggugcgccu
.......(((.((((((.((((((.(...((((((..(((((.((.......)))))))))))))...).)))))).)))))).)))....

Structure
guauaua   g      a      a ugu      uu     c  ag 
       gca ucagga cggccg g   ggugua  guacu gu  a
       ||| |||||| |||||| |   ||||||  ||||| ||  a
       cgu gguucU GCCGGC C   CCACGU  UAUga ca  a
---uccg   g      A      C UGU      --     -  au 


Annotation confidence Not enough data
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Genome context
reftig_1: 1335536-1335626 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from csa-mir-92c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csa-miR-92c

Accession MIMAT0006125
Description Ciona savignyi csa-miR-92c mature miRNA
Sequence 57 - UAUUGCACCUGUCCCGGCCGAU - 78
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080