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Altered miRNA repertoire in the simplified chordate, Oikopleura dioica |
|
|---|---|
| PubMed ID | 18339653 |
| Authors | "Fu X, Adamski M, Thompson EM" |
| Journal | "Mol Biol Evol |
| Volume | 25 |
| Pages | 1067-1080 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| odi-mir-1468 | MI0007079 | None | None | None | - | ||
| odi-mir-1469 | MI0007080 | None | None | None | - | ||
| odi-mir-1470 | MI0007081 | None | None | None | - | ||
| odi-mir-1471 | MI0007082 | None | None | None | - | ||
| odi-mir-1472 | MI0007083 | None | None | None | - | ||
| odi-mir-1473 | MI0007084 | None | None | None | - | ||
| odi-mir-1474 | MI0007085 | None | None | None | - | ||
| odi-mir-1475 | MI0007086 | None | None | None | - | ||
| odi-mir-1476 | MI0007087 | None | None | None | - | ||
| odi-mir-1477 | MI0007088 | None | None | None | - | ||
| odi-mir-1478 | MI0007089 | None | None | None | - | ||
| odi-mir-1479 | MI0007090 | None | None | None | - | ||
| odi-mir-1480 | MI0007091 | None | None | None | - | ||
| odi-mir-1481 | MI0007092 | None | None | None | - | ||
| odi-mir-1482 | MI0007093 | None | None | None | - | ||
| odi-mir-1483 | MI0007094 | None | None | None | - | ||
| odi-mir-1484 | MI0007095 | None | None | None | - | ||
| odi-mir-1485 | MI0007096 | None | None | None | - | ||
| odi-mir-1486 | MI0007097 | None | None | None | - | ||
| odi-mir-1487 | MI0007098 | None | None | None | - | ||
| odi-mir-1489 | MI0007099 | None | None | None | - | ||
| odi-mir-1490a-1 | MI0007100 | None | None | None | - | ||
| odi-mir-1490a-2 | MI0007101 | None | None | None | - | ||
| odi-mir-1490b | MI0007102 | None | None | None | - | ||
| odi-mir-1491 | MI0007103 | None | None | None | - | ||
| odi-mir-1492 | MI0007104 | None | None | None | - | ||
| odi-mir-1493-1 | MI0007105 | None | None | None | - | ||
| odi-mir-1493-2 | MI0007106 | None | None | None | - | ||
| odi-mir-1494 | MI0007107 | None | None | None | - | ||
| odi-mir-1495 | MI0007108 | None | None | None | - | ||
| odi-mir-1496 | MI0007109 | None | None | None | - | ||
| odi-mir-1497a | MI0007110 | None | None | None | - | ||
| odi-mir-1497b | MI0007111 | None | None | None | - | ||
| odi-mir-1497c | MI0007112 | None | None | None | - | ||
| odi-mir-1497d-1 | MI0007113 | None | None | None | - | ||
| odi-mir-1497d-2 | MI0007114 | None | None | None | - | ||
| odi-mir-1497e | MI0007115 | None | None | None | - | ||
| odi-mir-1497f-1 | MI0007116 | None | None | None | - | ||
| odi-mir-1497f-2 | MI0007117 | None | None | None | - | ||
| odi-mir-1497g | MI0007118 | None | None | None | - | ||
| odi-mir-1497h | MI0007119 | None | None | None | - | ||
| odi-mir-1498 | MI0007120 | None | None | None | - | ||
| odi-mir-1499 | MI0007121 | None | None | None | - | ||
| odi-mir-1500 | MI0007122 | None | None | None | - | ||
| odi-mir-1501 | MI0007123 | None | None | None | - | ||
| odi-mir-1502 | MI0007124 | None | None | None | - | ||
| odi-mir-1503 | MI0007125 | None | None | None | - | ||
| odi-mir-1504 | MI0007126 | None | None | None | - | ||
| odi-mir-1505 | MI0007127 | None | None | None | - | ||
| odi-mir-1506 | MI0007128 | None | None | None | - | ||
| cin-mir-1473 | MI0007129 | 99 | ref|NC_020175.1| | 1022995 | 1023074 | - | - |
| cin-mir-1497 | MI0007130 | 48196 | ref|NC_020174.1| | 5852686 | 5852789 | + | High |
| csa-mir-1473 | MI0007131 | None | reftig_44 | 256366 | 256466 | + | - |
| csa-mir-1497 | MI0007132 | None | reftig_55 | 1053106 | 1053208 | - | - |
| odi-mir-1a | MI0007133 | None | None | None | - | ||
| odi-mir-1b | MI0007134 | None | None | None | - | ||
| odi-mir-1c | MI0007135 | None | None | None | - | ||
| odi-let-7a | MI0007136 | None | None | None | - | ||
| odi-let-7b | MI0007137 | None | None | None | - | ||
| odi-let-7c | MI0007138 | None | None | None | - | ||
| odi-let-7d | MI0007139 | None | None | None | - | ||
| odi-mir-7-1 | MI0007140 | None | None | None | - | ||
| odi-mir-7-2 | MI0007141 | None | None | None | - | ||
| odi-mir-31 | MI0007142 | None | None | None | - | ||
| odi-mir-92a | MI0007143 | None | None | None | - | ||
| odi-mir-92b | MI0007144 | None | None | None | - | ||
| odi-mir-124a | MI0007145 | None | None | None | - | ||
| odi-mir-124b | MI0007146 | None | None | None | - | ||
| odi-mir-219 | MI0007147 | None | None | None | - | ||
| odi-mir-281 | MI0007148 | None | None | None | - | ||
| cin-let-7a-1 | MI0007149 | 2547 | ref|NC_020169.1| | 2157406 | 2157515 | + | High |
| cin-let-7a-2 | MI0007150 | 2500 | ref|NC_020169.1| | 2158324 | 2158433 | + | High |
| cin-let-7b | MI0007151 | 3522 | ref|NC_020169.1| | 2157934 | 2158042 | + | High |
| cin-let-7c | MI0007152 | 1001 | ref|NC_020169.1| | 2158126 | 2158235 | + | - |
| cin-let-7d | MI0007153 | 410 | ref|NC_020175.1| | 1022522 | 1022622 | - | High |
| cin-let-7e | MI0007154 | 3 | ref|NC_020175.1| | 1022526 | 1022622 | - | - |
| cin-mir-7 | MI0007155 | 106 | ref|NC_020166.1| | 1104827 | 1104904 | + | - |
| cin-mir-31 | MI0007156 | 148 | ref|NW_004190433.1| | 89179 | 89280 | - | - |
| cin-mir-33 | MI0007157 | 24 | ref|NW_004190509.1| | 34816 | 34916 | - | - |
| cin-mir-34 | MI0007158 | 657 | ref|NC_020175.1| | 3230568 | 3230686 | - | - |
| cin-mir-78 | MI0007159 | None | ref|NC_020167.1| | 7506833 | 7506931 | + | - |
| cin-mir-92a | MI0007160 | 362 | ref|NC_020168.1| | 884615 | 884715 | + | High |
| cin-mir-92b | MI0007161 | 571 | ref|NC_020166.1| | 1925350 | 1925450 | + | High |
| cin-mir-92c | MI0007162 | 773 | ref|NC_020168.1| | 885408 | 885508 | + | - |
| cin-mir-101 | MI0007163 | 0 | None | None | - | ||
| cin-mir-124-1 | MI0007164 | 31455 | ref|NC_020172.1| | 4969836 | 4969912 | - | High |
| cin-mir-124-2 | MI0007165 | 31163 | ref|NC_020172.1| | 4969691 | 4969789 | - | High |
| cin-mir-126 | MI0007166 | 69 | ref|NC_020166.1| | 5485219 | 5485299 | - | High |
| cin-mir-133 | MI0007167 | 1885 | ref|NC_020166.1| | 8400610 | 8400710 | + | High |
| cin-mir-141 | MI0007168 | 2406 | ref|NW_004190646.1| | 8704 | 8778 | + | High |
| cin-mir-153 | MI0007169 | 2078 | ref|NC_020170.1| | 1106299 | 1106400 | + | Medium |
| cin-mir-155 | MI0007170 | None | ref|NC_020169.1| | 2251849 | 2251949 | - | - |
| cin-mir-181 | MI0007171 | None | ref|NC_020168.1| | 2866329 | 2866442 | - | - |
| cin-mir-183 | MI0007172 | 14 | ref|NW_004190416.1| | 543628 | 543707 | - | Medium |
| cin-mir-184 | MI0007173 | 37 | ref|NC_020176.1| | 4043118 | 4043219 | - | - |
| cin-mir-199 | MI0007174 | None | None | None | - | ||
| cin-mir-200 | MI0007175 | 1289 | ref|NW_004190646.1| | 8331 | 8416 | + | High |
| cin-mir-216 | MI0007176 | 319 | None | None | Medium | ||
| cin-mir-217 | MI0007177 | 2494 | None | None | - | ||
| cin-mir-219 | MI0007178 | 1355 | ref|NC_020172.1| | 4370263 | 4370364 | - | Medium |
| cin-mir-281 | MI0007179 | 6 | ref|NW_004190384.1| | 205004 | 205102 | + | - |
| cin-mir-672 | MI0007180 | 0 | None | None | - | ||
| csa-let-7a | MI0007181 | None | reftig_41 | 1116068 | 1116169 | + | - |
| csa-let-7b | MI0007182 | None | reftig_41 | 1115604 | 1115705 | + | - |
| csa-let-7c-1 | MI0007183 | None | reftig_41 | 1114139 | 1114239 | + | - |
| csa-let-7c-2 | MI0007184 | None | reftig_41 | 1117496 | 1117597 | + | - |
| csa-let-7d | MI0007185 | None | reftig_44 | 256943 | 257044 | + | - |
| csa-mir-7 | MI0007186 | None | reftig_30 | 3091327 | 3091429 | + | - |
| csa-mir-31 | MI0007187 | None | reftig_48 | 895318 | 895399 | - | - |
| csa-mir-34 | MI0007188 | None | reftig_0 | 1439035 | 1439136 | + | - |
| csa-mir-92a | MI0007189 | None | reftig_1 | 1336385 | 1336487 | + | - |
| csa-mir-92b | MI0007190 | None | reftig_1 | 1335375 | 1335474 | + | - |
| csa-mir-92c | MI0007191 | None | reftig_1 | 1335536 | 1335626 | + | - |
| csa-mir-124-1 | MI0007192 | None | reftig_262 | 49392 | 49494 | + | - |
| csa-mir-124-2 | MI0007193 | None | reftig_262 | 49519 | 49620 | + | - |
| csa-mir-126 | MI0007194 | None | reftig_27 | 688926 | 689026 | - | - |
| csa-mir-133 | MI0007195 | None | reftig_62 | 225568 | 225668 | - | - |
| csa-mir-141 | MI0007196 | None | reftig_613 | 31866 | 31949 | + | - |
| csa-mir-153 | MI0007197 | None | reftig_48 | 2357835 | 2357936 | - | - |
| csa-mir-155 | MI0007198 | None | reftig_1 | 133886 | 134023 | - | - |
| csa-mir-183 | MI0007199 | None | reftig_48 | 1818292 | 1818394 | - | - |
| csa-mir-200 | MI0007200 | None | reftig_613 | 31353 | 31432 | + | - |
| csa-mir-216a | MI0007201 | None | reftig_16 | 3925105 | 3925187 | + | - |
| csa-mir-216b | MI0007202 | None | reftig_16 | 3924783 | 3924863 | + | - |
| csa-mir-217 | MI0007203 | None | reftig_16 | 3925235 | 3925336 | + | - |
| csa-mir-219 | MI0007204 | None | reftig_67 | 317190 | 317291 | + | - |
| csa-mir-281 | MI0007205 | None | reftig_67 | 861516 | 861617 | + | - |