Stem-loop cin-mir-183

Accession

MI0007172

Description

Ciona intestinalis cin-mir-183 precursor miRNA

Gene family

MIPF0000066; mir-183

Literature search

1 open access papers mention cin-mir-183
(1 sentences)

Sequence

16 reads, 14 reads per million, 1 experiments

cugguguuuucggugUAUGGCACUGGUAGAAUUCACUGccaagccaGUGGUUCAACAAGCGCCGUAagcuggaaacacua
.(((((((((((((.((((((.((.((.((((.(((((......))))))))).)).)).)))))).)))))))))))))

Structure

c             g      A  G  A    U     cc 
 ugguguuuucggu UAUGGC CU GU GAAU CACUG  a
 ||||||||||||| |||||| || || |||| |||||   
 aucacaaaggucg AUGCCG GA CA CUUG GUGac  a
-             a      C  A  A    -     cg 

Annotation confidence Not enough data

Genome context

scaffold_36: 549852-549931 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-183

Mature cin-miR-183-5p

• Accession: MIMAT0006107
• Description: Ciona intestinalis cin-miR-183-5p mature miRNA
• Sequence: 16 - UAUGGCACUGGUAGAAUUCACUG - 38
• Evidence: experimental ; Illumina [2]

Mature cin-miR-183-3p

• Accession: MIMAT0015262
• Description: Ciona intestinalis cin-miR-183-3p mature miRNA
• Sequence: 47 - GUGGUUCAACAAGCGCCGUA - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39