Stem-loop cin-mir-281

Accession

MI0007179

Description

Ciona intestinalis cin-mir-281 precursor miRNA

Literature search

1 open access papers mention cin-mir-281
(1 sentences)

Sequence

18 reads, 6 reads per million, 2 experiments

uuggaaaauauauaacuguccagugcguguCGGAGAGUAAUUUCAUGUUagugacaucauacuacUGUCAUGGAGUUGCUCUCUUAUUagcgcugaggcca
.................(((((((((..((.((((((((((((((((.(((((.........))))).)))))))))))))))).))..)))))).)))..

Structure

uuggaaaauauauaacu   -      gu  C                U     aca 
                 guc cagugc  gu GGAGAGUAAUUUCAUG Uagug   u
                 ||| ||||||  || |||||||||||||||| |||||   c
                 cgg gucgcg  UA UCUCUCGUUGAGGUAC GUcau   a
---------------ac   a      aU  U                U     cau 

Annotation confidence Not enough data

Genome context

scaffold_64: 295962-296062 [-]

Mature cin-miR-281-5p

• Accession: MIMAT0015265
• Description: Ciona intestinalis cin-miR-281-5p mature miRNA
• Sequence: 31 - CGGAGAGUAAUUUCAUGUU - 49
• Evidence: experimental ; Illumina [2]

Mature cin-miR-281-3p

• Accession: MIMAT0006114
• Description: Ciona intestinalis cin-miR-281-3p mature miRNA
• Sequence: 66 - UGUCAUGGAGUUGCUCUCUUAUU - 88
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39