miRBase entry: csa-mir-92c

Stem-loop csa-mir-92c

Accession

MI0007191

Description

Ciona savignyi csa-mir-92c precursor miRNA

Literature search

1 open access papers mention csa-mir-92c
(5 sentences)

Sequence

guauauagcagucaggaacggccgagugugguguauuguacucguagaaauaacagUAUUGCACCUGUCCCGGCCGAUcuugggugcgccu
.......(((.((((((.((((((.(...((((((..(((((.((.......)))))))))))))...).)))))).)))))).)))....

Structure

guauaua   g      a      a ugu      uu     c  ag 
       gca ucagga cggccg g   ggugua  guacu gu  a
       ||| |||||| |||||| |   ||||||  ||||| ||  a
       cgu gguucU GCCGGC C   CCACGU  UAUga ca  a
---uccg   g      A      C UGU      --     -  au

Annotation confidence Not enough data

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Genome context

reftig_1: 1335536-1335626 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csa-mir-92c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature csa-miR-92c

Accession	MIMAT0006125
Description	Ciona savignyi csa-miR-92c mature miRNA
Sequence	57 - UAUUGCACCUGUCCCGGCCGAU - 78
Evidence	not_experimental

References

PubMed ID: 18339653
Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
"Fu X, Adamski M, Thompson EM"
"Mol Biol Evol (2008) 25:1067-1080