Stem-loop csa-mir-92c

Accession

MI0007191

Description

Ciona savignyi csa-mir-92c precursor miRNA

Literature search

1 open access papers mention csa-mir-92c
(5 sentences)

Sequence

guauauagcagucaggaacggccgagugugguguauuguacucguagaaauaacagUAUUGCACCUGUCCCGGCCGAUcuugggugcgccu
.......(((.((((((.((((((.(...((((((..(((((.((.......)))))))))))))...).)))))).)))))).)))....

Structure

guauaua   g      a      a ugu      uu     c  ag 
       gca ucagga cggccg g   ggugua  guacu gu  a
       ||| |||||| |||||| |   ||||||  ||||| ||  a
       cgu gguucU GCCGGC C   CCACGU  UAUga ca  a
---uccg   g      A      C UGU      --     -  au 

Annotation confidence Not enough data

Genome context

reftig_1: 1335536-1335626 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csa-mir-92c

Mature csa-miR-92c

• Accession: MIMAT0006125
• Description: Ciona savignyi csa-miR-92c mature miRNA
• Sequence: 57 - UAUUGCACCUGUCCCGGCCGAU - 78
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080