miRBase entry: csa-mir-200

Stem-loop csa-mir-200

Accession

MI0007200

Description

Ciona savignyi csa-mir-200 precursor miRNA

Sequence

ggucacugaagcaucaacccgguaguacgauaugugagcuguaUAAUACUGCCUGGUAAUGAUGAuucaguggcgucgcg
.(((((((((.((((((((.(((((((..((((.......))))..))))))).)))..))))).)))))))))......

Structure

-----g         g     --   c       cg    gu 
      gucacugaa cauca  acc gguagua  auau  g
      ||||||||| |||||  ||| |||||||  ||||  a
      cggugacuu GUAGU  UGG CCGUCAU  Uaug  g
gcgcug         A     AA   U       AA    uc

Annotation confidence Not enough data

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Genome context

reftig_613: 31353-31432 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csa-mir-200

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature csa-miR-200

Accession	MIMAT0006133
Description	Ciona savignyi csa-miR-200 mature miRNA
Sequence	44 - UAAUACUGCCUGGUAAUGAUGA - 65
Evidence	not_experimental

References

PubMed ID: 18339653
Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
"Fu X, Adamski M, Thompson EM"
"Mol Biol Evol (2008) 25:1067-1080