Stem-loop csa-let-7a

Accession

MI0007181

Description

Ciona savignyi csa-let-7a precursor miRNA

Literature search

2 open access papers mention csa-let-7a
(14 sentences)

Sequence

caaagccgcucaaaaUGAGGUAGUAGGUUAUAUCAGUugaauauuuuaccauggugauaacuguauaaccaacuagcuuucuuaaacgguuuacuaucagca
..((((((........(((.((((.(((((((.((((((......((((....))))))))))))))))).)))).))).......))))))..........

Structure

--------ca      cucaaaaU   G    A       U      aauauu    c 
          aagccg        GAG UAGU GGUUAUA CAGUug      uuac a
          ||||||        ||| |||| ||||||| ||||||      ||||  
          uuuggc        uuc auca ccaauau gucaau      agug u
acgacuauca      -aaauucu   g    a       -      ------    g 

Annotation confidence Not enough data

Genome context

reftig_41: 1116068-1116169 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from csa-let-7a

Mature csa-let-7a

• Accession: MIMAT0006116
• Description: Ciona savignyi csa-let-7a mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUAUAUCAGU - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080