Stem-loop cin-let-7c

Accession

MI0007152

Description

Ciona intestinalis cin-let-7c precursor miRNA

Literature search

3 open access papers mention cin-let-7c
(18 sentences)

Sequence

2897 reads, 995 reads per million, 2 experiments

ugaacugauucaaguUGAGGUAGUAGGUUAUAUCAGUugauuauaugaaccaggagauaacuguauagcccacuagcuuacuugcaugguuuacuuucaaccaaaaagag
((((((.((.(((((.(((.((((.(((((((.((((((.((...((...))...))))))))))))))).)))).)))))))).)))))))).................

Structure

-----------------      g  u     U   G    A       U      a  aua  a 
                 ugaacu au caagu GAG UAGU GGUUAUA CAGUug uu   ug  
                 |||||| || ||||| ||| |||| ||||||| |||||| ||   || a
                 auuugg ua guuca uuc auca ccgauau gucaau ag   ac  
gagaaaaaccaacuuuc      -  c     -   g    c       -      -  agg  c 

Annotation confidence Low

Genome context

4q: 2082979-2083088 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cin-let-7c

Mature cin-let-7c

• Accession: MIMAT0006088
• Description: Ciona intestinalis cin-let-7c mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUAUAUCAGU - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39