Stem-loop csa-mir-217

Accession

MI0007203

Description

Ciona savignyi csa-mir-217 precursor miRNA

Literature search

1 open access papers mention csa-mir-217
(1 sentences)

Sequence

gaaaguggggcgagaUACUGCAUUAGGAACUGAUUGGuuguuaauuucacucaguuucaggugcauuaaauugcuacacuauaugucauccaccaguaugag
...((((.(((((..((.((((((.((((((((.(((.........))).)))))))).)))))).))..))))).)))).....((((.(....).)))).

Structure

-------------------gaa    g     ga  C      A        U   uug 
                      agug ggcga  UA UGCAUU GGAACUGA UGG   u
                      |||| |||||  || |||||| |||||||| |||   u
                      ucac ucguu  au acgugg cuuugacu acu   a
gaguaugaccaccuacuguaua    a     aa  u      a        c   uua 

Annotation confidence Low

Genome context

reftig_16: 3925235-3925336 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csa-mir-217

Mature csa-miR-217

• Accession: MIMAT0006136
• Description: Ciona savignyi csa-miR-217 mature miRNA
• Sequence: 16 - UACUGCAUUAGGAACUGAUUGG - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080