Stem-loop csa-mir-126

Accession

MI0007194

Description

Ciona savignyi csa-mir-126 precursor miRNA

Literature search

2 open access papers mention csa-mir-126
(3 sentences)

Sequence

gugucauaauuaugguuuucgaugcugccuuguuaccuacgguaccagguagaaaguaagucaucUCGUACCGUGAGUAAUAAAGCauucucggaggcuca
.............(((((((((...(((.(((((((.((((((((.((((.((.......)))))).)))))))).))))))).)))...)))))))))..

Structure

gugucauaauuau         ugc   c       c        c    a  aa 
             gguuuucga   ugc uuguuac uacgguac aggu ga  g
             |||||||||   ||| ||||||| |||||||| |||| ||  u
             ucggaggcu   aCG AAUAAUG GUGCCAUG Ucua cu  a
-----------ac         cuu   A       A        C    -  ga 

Annotation confidence Low

Genome context

reftig_27: 688926-689026 [-]

Mature csa-miR-126

• Accession: MIMAT0006127
• Description: Ciona savignyi csa-miR-126 mature miRNA
• Sequence: 66 - UCGUACCGUGAGUAAUAAAGC - 86
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080