Stem-loop csa-mir-133

Accession

MI0007195

Description

Ciona savignyi csa-mir-133 precursor miRNA

Sequence

ugaguaaaaaaaacacugcuugugacgguuguugguaaagaggaucgaaccuggaaaaugaugguUUGGUCCCCUUCAACCAGCUAccgaugcaacgcacg
................(((((((..((((.((((((.(((.((((((((((...........)))))))))).)))..)))))).))))..)))).)))..

Structure

ugaguaaaaaaaacac   -    ga    u      -a   a          ugga 
                ugc uugu  cggu guuggu  aag ggaucgaacc    a
                ||| ||||  |||| ||||||  ||| ||||||||||    a
                acg aacg  gccA CGACCA  UUC CCUGGUUugg    a
--------------gc   c    ua    U      AC   C          uagu 

Annotation confidence Not enough data

Genome context

reftig_62: 225568-225668 [-]

Mature csa-miR-133

• Accession: MIMAT0006128
• Description: Ciona savignyi csa-miR-133 mature miRNA
• Sequence: 66 - UUGGUCCCCUUCAACCAGCUA - 86
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080