Stem-loop cin-let-7a-2

Accession

MI0007150

Description

Ciona intestinalis cin-let-7a-2 precursor miRNA

Literature search

3 open access papers mention cin-let-7a-2
(18 sentences)

Sequence

7178 reads, 2495 reads per million, 2 experiments

auaguugucgauauuaUGAGGUAGUAGGUUAUGCAGUuuugcgacauuauucucguugcguuggagauaaCUGUGUAGCCUACUGACUCUAaugucuucagcucucucuu
..(((((..(((((((.(((..((((((((((((((((((.((((..............)))).)))..)))))))))))))))..))))))))))..))))).......

Structure

-----au     uc       U   GU               --   g    auuauu 
       aguug  gauauua GAG  AGUAGGUUAUGCAGU  uuu cgac      c
       |||||  ||||||| |||  |||||||||||||||  ||| ||||       
       ucgac  cuguaAU CUC  UCAUCCGAUGUGUCa  aga guug      u
uucucuc     uu       -   AG               au   g    cguugc 

Annotation confidence Not enough data

Genome context

4q: 2083177-2083286 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cin-let-7a-2

Mature cin-let-7a-5p

• Accession: MIMAT0006086
• Description: Ciona intestinalis cin-let-7a-5p mature miRNA
• Sequence: 17 - UGAGGUAGUAGGUUAUGCAGU - 37
• Evidence: experimental ; Illumina [2]

Mature cin-let-7a-2-3p

• Accession: MIMAT0015248
• Description: Ciona intestinalis cin-let-7a-2-3p mature miRNA
• Sequence: 71 - CUGUGUAGCCUACUGACUCUA - 91
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39