Stem-loop csa-let-7b

Accession

MI0007182

Description

Ciona savignyi csa-let-7b precursor miRNA

Literature search

2 open access papers mention csa-let-7b
(14 sentences)

Sequence

uaguagucuuguuguUGAGGUAGUAGGUUAUGUUGUUgcgugaauuacaacacacaggagauacaacaugacuuacucaucucugcagaagggcuacagcua
..((((((((.((((.((((((((((((((((((((((.(((........))).))......))))))))))))))).))))).)))).)))))))).....

Structure

---ua        g    U     -               ------  c   aau 
     guagucuu uugu GAGGU AGUAGGUUAUGUUGU      Ug gug   u
     |||||||| |||| ||||| |||||||||||||||      || |||    
     caucggga gacg cucua ucauucaguacaaca      ac cac   a
aucga        a    u     c               uagagg  a   aac 

Annotation confidence Not enough data

Genome context

reftig_41: 1115604-1115705 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from csa-let-7b

Mature csa-let-7b

• Accession: MIMAT0006117
• Description: Ciona savignyi csa-let-7b mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUAUGUUGUU - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080