miRBase entry: cin-mir-199

Stem-loop cin-mir-199


Accession
MI0007174
Description
Ciona intestinalis cin-mir-199 precursor miRNA


Sequence

uugauaggacuugauguggcgguaaaggauacaccugcagcaacuuugcggcacuucggcauacgACAGUAGUCUGCACAUUGGGUGucuagcugcuacaug
.............((((((((((...((((((.(((((((((....)))(((((((((.....))).))).)))))))....)))))))).)))))))))).

Structure
uugauaggacuug          aaa      a  ----    gcaacuuugc   -   -   g 
             auguggcggu   ggauac cc    ugca          ggc acu ucg c
             ||||||||||   |||||| ||    ||||          ||| ||| ||| a
             uacaucgucg   ucuGUG GG    ACGU          CUG UGA Agc u
------------g          --a      -  UUAC    ----------   A   C   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-199-3p

Accession MIMAT0006109
Description Ciona intestinalis cin-miR-199-3p mature miRNA
Sequence 66 - ACAGUAGUCUGCACAUUGGGUG - 87
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080