Stem-loop csa-mir-124-2

Accession

MI0007193

Description

Ciona savignyi csa-mir-124-2 precursor miRNA

Literature search

2 open access papers mention csa-mir-124-2
(2 sentences)

Sequence

gugacguaaaaucaauaaugcgcuucauccgcguuugcugcggaccuucuugugugacaucacaaUAAGGCACGCGGUGAAUGCCAAugaaacgucaucacu
(((((((................(((((..((((((((((((..((((.(((((......))))).))))..))))))))))))..))))))))))))....

Structure

----       aaaaucaauaaugcgc     cc            ga    c     ug 
    gugacgu                uucau  gcguuugcugcg  ccuu uugug  a
    |||||||                |||||  ||||||||||||  |||| |||||   
    uacugca                aaguA  CGUAAGUGGCGC  GGAA aacac  c
ucac       ----------------     AC            AC    U     ua 

Annotation confidence Not enough data

Genome context

reftig_262: 49519-49620 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csa-mir-124-2

Mature csa-miR-124

• Accession: MIMAT0006126
• Description: Ciona savignyi csa-miR-124 mature miRNA
• Sequence: 66 - UAAGGCACGCGGUGAAUGCCAA - 87
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080