miRBase entry: csa-mir-92a

Stem-loop csa-mir-92a

Accession

MI0007189

Description

Ciona savignyi csa-mir-92a precursor miRNA

Sequence

aucauaaccacaacuauguaucaauaugccuagaccagacaaaguguauugcguuguugcaaucgUAUUGCACUUGUCCCGGUCUAagcauuugguaagaaag
..((((........))))((((((.((((.((((((.(((((.(((((.(((((((...))).)))).))))))))))..)))))).))))))))))......

Structure

aucauaaccacaacuaug      u    c      -a     a     u    -   u 
                  uaucaa augc uagacc  gacaa gugua ugcg uug  
                  |||||| |||| ||||||  ||||| ||||| |||| ||| u
                  augguu uacg AUCUGG  CUGUU CACGU AUgc aac  
------------gaaaga      -    a      CC     -     U    u   g

Annotation confidence Not enough data

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Genome context

reftig_1: 1336385-1336487 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csa-mir-92a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature csa-miR-92a

Accession	MIMAT0006123
Description	Ciona savignyi csa-miR-92a mature miRNA
Sequence	66 - UAUUGCACUUGUCCCGGUCUA - 86
Evidence	not_experimental

References

PubMed ID: 18339653
Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
"Fu X, Adamski M, Thompson EM"
"Mol Biol Evol (2008) 25:1067-1080