Stem-loop cin-let-7e

Accession

MI0007154

Description

Ciona intestinalis cin-let-7e precursor miRNA

Literature search

6 open access papers mention cin-let-7e
(22 sentences)

Sequence

32439 reads, 1626.0 reads per million, 8 experiments

ucagcuauucguggcUGAGGUAGUUGGUUGUAUCGGUucccuugugaaauguuaacuauacagcccgcuaacuuaaccauugguugcuaacuauccac
.((((((...((((.((((.((((.((((((((.((((..(.........)..)))))))))))).)))).)))).))))))))))............

Structure

-----------u      uuc    c    G    U        C    cc uug 
            cagcua   gugg UGAG UAGU GGUUGUAU GGUu  c   u
            ||||||   |||| |||| |||| |||||||| ||||  |   g
            guuggu   uacc auuc aucg ccgacaua ucaa  g   a
caccuaucaauc      ---    a    a    c        -    uu uaa 

Annotation confidence Not enough data

Genome context

ref|NC_020175.1|: 1022526-1022622 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-let-7e

Mature cin-let-7e-5p

• Accession: MIMAT0006090
• Description: Ciona intestinalis cin-let-7e-5p mature miRNA
• Sequence: 16 - UGAGGUAGUUGGUUGUAUCGGU - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080