Stem-loop cin-mir-1497

Accession

MI0007130

Description

Ciona intestinalis cin-mir-1497 precursor miRNA

Literature search

2 open access papers mention cin-mir-1497
(3 sentences)

Sequence

785546 reads, 84648.0 reads per million, 9 experiments

gccggaaucuggcuguuagcgcaACCACUUGUGAAUCUCCAACacucggcuuuguccacgacuuugUUGAAGAAUUGCAGGUGGUAGGUgcuuucaagccguau
.........((((((..(((((.(((((((((((.(((.(((((.(((..........)))...))))).))).)))))))))))..)))))..).)))))...

Structure

gccggaauc     - uu     -a           A   C     --c   gcuu 
         uggcu g  agcgc  ACCACUUGUGA UCU CAACa   ucg    u
         ||||| |  |||||  ||||||||||| ||| |||||   |||     
         gccga c  ucgUG  UGGUGGACGUU AGA GUUgu   agc    g
------uau     a uu     GA           A   A     uuc   accu 

Annotation confidence High

Genome context

ref|NC_020174.1|: 5852686-5852789 [+]

Mature cin-miR-1497-5p

• Accession: MIMAT0015246
• Description: Ciona intestinalis cin-miR-1497-5p mature miRNA
• Sequence: 24 - ACCACUUGUGAAUCUCCAAC - 43
• Evidence: experimental ; Illumina [2]

Mature cin-miR-1497-3p

• Accession: MIMAT0006068
• Description: Ciona intestinalis cin-miR-1497-3p mature miRNA
• Sequence: 67 - UUGAAGAAUUGCAGGUGGUAGGU - 89
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39