Stem-loop csa-mir-34

Accession

MI0007188

Description

Ciona savignyi csa-mir-34 precursor miRNA

Sequence

auucacgugauucugAGGCAGUGUAGUUAGCUAGUUGuuuucuuauccggguggguuuguaccccacaucgguuuucauauaaacaacuacuuuuugcacua
...................(((((((..((.(((((((((......(((((((((.......))))).)))).........)))))))))))..))))))).

Structure

auucacgugauucugAGGC       UU  C         ---ucuuau    -     uu 
                   AGUGUAG  AG UAGUUGuuu         ccgg guggg  u
                   |||||||  || |||||||||         |||| |||||  g
                   ucacguu  uc aucaacaaa         ggcu caccc  u
------------------a       uu  -         uauacuuuu    a     ca 

Annotation confidence Low

Genome context

reftig_0: 1439035-1439136 [+]

Mature csa-miR-34

• Accession: MIMAT0006122
• Description: Ciona savignyi csa-miR-34 mature miRNA
• Sequence: 16 - AGGCAGUGUAGUUAGCUAGUUG - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080